No. words: 1572; after pruning: 1546


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:891)  655  0.15 0.00 0.00  UCW006F_D04_BG607308Tu02P002B03B091F1_030.ab1       62   741 (0)  C UCW006R_D04_BG607308Tu02P002B03B091R1_030.ab1   (0)   831   152 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1    UCW006F_D04_BG607308Tu02P002B03B091F1_030.ab1     1 
  309  C UCW006R_D04_BG607308Tu02P002B03B091R1_030.ab1   584 
  317    UCW006F_D04_BG607308Tu02P002B03B091F1_030.ab1   317 
  361  C UCW006R_D04_BG607308Tu02P002B03B091R1_030.ab1   532 
  369    UCW006F_D04_BG607308Tu02P002B03B091F1_030.ab1   369 
  373  C UCW006R_D04_BG607308Tu02P002B03B091R1_030.ab1   520 
  389    UCW006F_D04_BG607308Tu02P002B03B091F1_030.ab1   389 
  393  C UCW006R_D04_BG607308Tu02P002B03B091R1_030.ab1   500 
  457    UCW006F_D04_BG607308Tu02P002B03B091F1_030.ab1   457 
  461  C UCW006R_D04_BG607308Tu02P002B03B091R1_030.ab1   432 
  493    UCW006F_D04_BG607308Tu02P002B03B091F1_030.ab1   493 
  501  C UCW006R_D04_BG607308Tu02P002B03B091R1_030.ab1   392 
Contig length: old 892, new 892

Contig length: old 892, new 892
New start: 0