No. words: 998; after pruning: 958


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 3.4 (1,1:418)  361  0.74 0.25 0.74  BE398268At02P027E06P027E121F1_069.ab1        5   411 (54)  C BE398268At02P027E06P027E121R1_069.ab1   (118)   415    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C BE398268At02P027E06P027E121R1_069.ab1   533 
  287    BE398268At02P027E06P027E121F1_069.ab1   172 
  291  C BE398268At02P027E06P027E121R1_069.ab1   243 
  421    BE398268At02P027E06P027E121F1_069.ab1   306 
  425  C BE398268At02P027E06P027E121R1_069.ab1   109 
  433    BE398268At02P027E06P027E121F1_069.ab1   318 
  449  C BE398268At02P027E06P027E121R1_069.ab1    85 
  457    BE398268At02P027E06P027E121F1_069.ab1   342 
  481  C BE398268At02P027E06P027E121R1_069.ab1    53 
  485    BE398268At02P027E06P027E121F1_069.ab1   370 
  501  C BE398268At02P027E06P027E121R1_069.ab1    34 
  505    BE398268At02P027E06P027E121F1_069.ab1   390 
Contig length: old 579, new 580

Contig length: old 580, new 580
New start: 0 
S Change at: 53; seg lengths: entry 1, contig 1