No. words: 879; after pruning: 839


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -1.0 -1.0 (1,1:488)  215  6.48 0.00 1.02  BE398279As02P016A01A07R1_009.ab1        1   293 (2)  C BE398279As02P016A01A07F1_009.ab1   (97)   487   198 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C BE398279As02P016A01A07F1_009.ab1   584 
Contig length: old 584, new 584

Contig length: old 584, new 584
New start: 0 
S Change at: 157; seg lengths: entry 2, contig 2