No. words: 1155; after pruning: 1129


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   56    0.0 8.6 (1,1:549)  446  1.82 0.20 0.00  BE398279At01P016A01A07R1_007.ab1        1   494 (76)  C BE398279At01P016A01A07F1_007.ab1   (34)   551    57 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
56       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C BE398279At01P016A01A07F1_007.ab1   585 
  138    BE398279At01P016A01A07R1_007.ab1   103 
  142  C BE398279At01P016A01A07F1_007.ab1   444 
  150    BE398279At01P016A01A07R1_007.ab1   115 
  161  C BE398279At01P016A01A07F1_007.ab1   425 
Contig length: old 605, new 585

Contig length: old 585, new 585
New start: 0