No. words: 1178; after pruning: 1138


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   45    0.0 9.6 (1,1:550)  466  1.38 0.20 0.00  BE398279At02P016A01A07R1_005.ab1        1   506 (80)  C BE398279At02P016A01A07F1_005.ab1   (40)   552    46 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
45       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C BE398279At02P016A01A07F1_005.ab1   592 
  157    BE398279At02P016A01A07R1_005.ab1   116 
  167  C BE398279At02P016A01A07F1_005.ab1   426 
Contig length: old 627, new 592

Contig length: old 592, new 592
New start: 0