No. words: 1764; after pruning: 1738


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.5 (1,1:862)  831  0.12 0.00 0.00  BE399500Ld04P067B01P067B071F1_049.ab1        1   863 (3)  C BE399500Ld04P067B01P067B071R1_049.ab1   (35)   863     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  430 nodes

 217 str. conn. components

Path
    1  C BE399500Ld04P067B01P067B071R1_049.ab1   898 
   44    BE399500Ld04P067B01P067B071F1_049.ab1     9 
  520  C BE399500Ld04P067B01P067B071R1_049.ab1   379 
  532    BE399500Ld04P067B01P067B071F1_049.ab1   497 
  540  C BE399500Ld04P067B01P067B071R1_049.ab1   359 
  544    BE399500Ld04P067B01P067B071F1_049.ab1   509 
  552  C BE399500Ld04P067B01P067B071R1_049.ab1   347 
  888    BE399500Ld04P067B01P067B071F1_049.ab1   853 
Contig length: old 901, new 901

Contig length: old 901, new 901
New start: 0