No. words: 1081; after pruning: 1055


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:360)  353  0.28 0.28 0.00  BE403428Ld01P129B01P129B071F1_087.ab1        2   361 (195)  C BE403428Ld01P129B01P129B071R1_087.ab1   (164)   361     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C BE403428Ld01P129B01P129B071R1_087.ab1   525 
  374    BE403428Ld01P129B01P129B071F1_087.ab1   210 
  378  C BE403428Ld01P129B01P129B071R1_087.ab1   148 
  398    BE403428Ld01P129B01P129B071F1_087.ab1   234 
  406  C BE403428Ld01P129B01P129B071R1_087.ab1   120 
  422    BE403428Ld01P129B01P129B071F1_087.ab1   258 
  454  C BE403428Ld01P129B01P129B071R1_087.ab1    72 
  466    BE403428Ld01P129B01P129B071F1_087.ab1   302 
Contig length: old 720, new 720

Contig length: old 720, new 720
New start: 0