No. words: 1090; after pruning: 1064


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.4 (1,1:369)  361  0.27 0.00 0.27  BE403428Ld04P129B01P129B071F1_096.ab1        2   370 (193)  C BE403428Ld04P129B01P129B071R1_096.ab1   (159)   368     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C BE403428Ld04P129B01P129B071R1_096.ab1   527 
  270    BE403428Ld04P129B01P129B071F1_096.ab1   112 
  282  C BE403428Ld04P129B01P129B071R1_096.ab1   246 
  290    BE403428Ld04P129B01P129B071F1_096.ab1   132 
  306  C BE403428Ld04P129B01P129B071R1_096.ab1   222 
  350    BE403428Ld04P129B01P129B071F1_096.ab1   192 
  354  C BE403428Ld04P129B01P129B071R1_096.ab1   174 
  366    BE403428Ld04P129B01P129B071F1_096.ab1   208 
  414  C BE403428Ld04P129B01P129B071R1_096.ab1   114 
  426    BE403428Ld04P129B01P129B071F1_096.ab1   268 
  462  C BE403428Ld04P129B01P129B071R1_096.ab1    66 
  466    BE403428Ld04P129B01P129B071F1_096.ab1   308 
Contig length: old 720, new 721

Contig length: old 721, new 721
New start: 0