No. words: 1083; after pruning: 1057


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.8 (1,1:359)  348  0.56 0.28 0.00  BE403428Ld08P129B01P129B071F1_088.ab1        3   360 (197)  C BE403428Ld08P129B01P129B071R1_088.ab1   (167)   359     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C BE403428Ld08P129B01P129B071R1_088.ab1   526 
  278    BE403428Ld08P129B01P129B071F1_088.ab1   112 
  290  C BE403428Ld08P129B01P129B071R1_088.ab1   237 
  338    BE403428Ld08P129B01P129B071F1_088.ab1   172 
  390  C BE403428Ld08P129B01P129B071R1_088.ab1   137 
  394    BE403428Ld08P129B01P129B071F1_088.ab1   228 
  398  C BE403428Ld08P129B01P129B071R1_088.ab1   129 
  402    BE403428Ld08P129B01P129B071F1_088.ab1   236 
  414  C BE403428Ld08P129B01P129B071R1_088.ab1   113 
  426    BE403428Ld08P129B01P129B071F1_088.ab1   260 
  462  C BE403428Ld08P129B01P129B071R1_088.ab1    65 
  470    BE403428Ld08P129B01P129B071F1_088.ab1   304 
Contig length: old 723, new 723

Contig length: old 723, new 723
New start: 0