No. words: 1154; after pruning: 1058


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 2.0 (1,1:658)  428  4.25 0.00 0.00  BE404374Ta22P146F02P129G071F1_006.ab1       53   546 (1)  C BE404374Ta22P146F02P129G071R1_006.ab1   (0)   607   114 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1    BE404374Ta22P146F02P129G071F1_006.ab1     1 
  349  C BE404374Ta22P146F02P129G071R1_006.ab1   311 
  361    BE404374Ta22P146F02P129G071F1_006.ab1   361 
  422  C BE404374Ta22P146F02P129G071R1_006.ab1   238 
  442    BE404374Ta22P146F02P129G071F1_006.ab1   442 
  457  C BE404374Ta22P146F02P129G071R1_006.ab1   203 
  465    BE404374Ta22P146F02P129G071F1_006.ab1   465 
  480  C BE404374Ta22P146F02P129G071R1_006.ab1   180 
  484    BE404374Ta22P146F02P129G071F1_006.ab1   484 
  496  C BE404374Ta22P146F02P129G071R1_006.ab1   164 
Contig length: old 659, new 659

Contig length: old 659, new 659
New start: 0 
S Change at: 72; seg lengths: entry 1, contig 1