No. words: 1254; after pruning: 1228


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 6.8 (1,1:499)  461  0.61 0.20 0.20  BE405221Ld09P003A04A10F1_042.ab1        1   492 (147)  C BE405221Ld09P003A04A10R1_042.ab1   (115)   500     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C BE405221Ld09P003A04A10R1_042.ab1   615 
  161    BE405221Ld09P003A04A10F1_042.ab1    45 
  169  C BE405221Ld09P003A04A10R1_042.ab1   447 
  173    BE405221Ld09P003A04A10F1_042.ab1    57 
  177  C BE405221Ld09P003A04A10R1_042.ab1   439 
  185    BE405221Ld09P003A04A10F1_042.ab1    69 
  189  C BE405221Ld09P003A04A10R1_042.ab1   427 
  193    BE405221Ld09P003A04A10F1_042.ab1    77 
  225  C BE405221Ld09P003A04A10R1_042.ab1   391 
  249    BE405221Ld09P003A04A10F1_042.ab1   133 
  269  C BE405221Ld09P003A04A10R1_042.ab1   347 
  305    BE405221Ld09P003A04A10F1_042.ab1   189 
  309  C BE405221Ld09P003A04A10R1_042.ab1   307 
  345    BE405221Ld09P003A04A10F1_042.ab1   229 
  353  C BE405221Ld09P003A04A10R1_042.ab1   263 
  369    BE405221Ld09P003A04A10F1_042.ab1   253 
  377  C BE405221Ld09P003A04A10R1_042.ab1   239 
  405    BE405221Ld09P003A04A10F1_042.ab1   289 
  429  C BE405221Ld09P003A04A10R1_042.ab1   187 
  437    BE405221Ld09P003A04A10F1_042.ab1   321 
  457  C BE405221Ld09P003A04A10R1_042.ab1   159 
  469    BE405221Ld09P003A04A10F1_042.ab1   353 
  517  C BE405221Ld09P003A04A10R1_042.ab1    99 
  541    BE405221Ld09P003A04A10F1_042.ab1   425 
  557  C BE405221Ld09P003A04A10R1_042.ab1    59 
  569    BE405221Ld09P003A04A10F1_042.ab1   453 
Contig length: old 754, new 755

Contig length: old 755, new 755
New start: 0