No. words: 1564; after pruning: 1538


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:964)  591  0.00 0.00 0.00  BE405599At01P003A02P003A081F1_053.ab1      184   782 (0)  C BE405599At01P003A02P003A081R1_053.ab1   (0)   782   184 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1    BE405599At01P003A02P003A081F1_053.ab1     1 
  495  C BE405599At01P003A02P003A081R1_053.ab1   471 
  503    BE405599At01P003A02P003A081F1_053.ab1   503 
  551  C BE405599At01P003A02P003A081R1_053.ab1   415 
  559    BE405599At01P003A02P003A081F1_053.ab1   559 
  575  C BE405599At01P003A02P003A081R1_053.ab1   391 
  763    BE405599At01P003A02P003A081F1_053.ab1   763 
  767  C BE405599At01P003A02P003A081R1_053.ab1   199 
Contig length: old 965, new 965

Contig length: old 965, new 965
New start: 0