No. words: 1011; after pruning: 971


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:334)  304  0.30 0.60 0.30  BE423249Ld02P103C02P103E081F1_076.ab1        1   335 (170)  C BE423249Ld02P103C02P103E081R1_076.ab1   (170)   336     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  156 nodes

 80 str. conn. components

Path
    1  C BE423249Ld02P103C02P103E081R1_076.ab1   506 
  272    BE423249Ld02P103C02P103E081F1_076.ab1   100 
  280  C BE423249Ld02P103C02P103E081R1_076.ab1   227 
  396    BE423249Ld02P103C02P103E081F1_076.ab1   224 
  412  C BE423249Ld02P103C02P103E081R1_076.ab1    95 
  416    BE423249Ld02P103C02P103E081F1_076.ab1   244 
  460  C BE423249Ld02P103C02P103E081R1_076.ab1    47 
  476    BE423249Ld02P103C02P103E081F1_076.ab1   304 
  484  C BE423249Ld02P103C02P103E081R1_076.ab1    23 
  494    BE423249Ld02P103C02P103E081F1_076.ab1   322 
Contig length: old 676, new 677

Contig length: old 677, new 677
New start: 0