No. words: 1252; after pruning: 1226


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:473)  459  0.21 0.21 0.00  BE424246Ld02P129C02P129C081F1_090.ab1        1   474 (164)  C BE424246Ld02P129C02P129C081R1_090.ab1   (139)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C BE424246Ld02P129C02P129C081R1_090.ab1   614 
  577    BE424246Ld02P129C02P129C081F1_090.ab1   437 
  581  C BE424246Ld02P129C02P129C081R1_090.ab1    34 
  597    BE424246Ld02P129C02P129C081F1_090.ab1   457 
  601  C BE424246Ld02P129C02P129C081R1_090.ab1    14 
  605    BE424246Ld02P129C02P129C081F1_090.ab1   465 
Contig length: old 778, new 778

Contig length: old 778, new 778
New start: 0