No. words: 1244; after pruning: 1218


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.5 (1,1:462)  453  0.00 0.22 0.00  BE426298Ld06P103B03P103B091F1_090.ab1        5   463 (173)  C BE426298Ld06P103B03P103B091R1_090.ab1   (148)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C BE426298Ld06P103B03P103B091R1_090.ab1   608 
  222    BE426298Ld06P103B03P103B091F1_090.ab1    77 
  226  C BE426298Ld06P103B03P103B091R1_090.ab1   383 
  262    BE426298Ld06P103B03P103B091F1_090.ab1   117 
  274  C BE426298Ld06P103B03P103B091R1_090.ab1   335 
  306    BE426298Ld06P103B03P103B091F1_090.ab1   161 
  462  C BE426298Ld06P103B03P103B091R1_090.ab1   147 
  466    BE426298Ld06P103B03P103B091F1_090.ab1   321 
  522  C BE426298Ld06P103B03P103B091R1_090.ab1    87 
  526    BE426298Ld06P103B03P103B091F1_090.ab1   381 
  530  C BE426298Ld06P103B03P103B091R1_090.ab1    79 
  538    BE426298Ld06P103B03P103B091F1_090.ab1   393 
Contig length: old 781, new 781

Contig length: old 781, new 781
New start: 0