No. words: 1563; after pruning: 1537


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:1135)  412  0.00 0.00 0.00  BE426393Ld09P016D02P016D081F1_040.ab1      344   770 (0)  C BE426393Ld09P016D02P016D081R1_040.ab1   (0)   793   367 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    BE426393Ld09P016D02P016D081F1_040.ab1     1 
  539  C BE426393Ld09P016D02P016D081R1_040.ab1   598 
  543    BE426393Ld09P016D02P016D081F1_040.ab1   543 
  559  C BE426393Ld09P016D02P016D081R1_040.ab1   578 
  567    BE426393Ld09P016D02P016D081F1_040.ab1   567 
  579  C BE426393Ld09P016D02P016D081R1_040.ab1   558 
  583    BE426393Ld09P016D02P016D081F1_040.ab1   583 
  587  C BE426393Ld09P016D02P016D081R1_040.ab1   550 
Contig length: old 1136, new 1136

Contig length: old 1136, new 1136
New start: 0