No. words: 1027; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:0)  299  1.82 0.00 0.00  BE426763At01P067C02P067C081R1_056.ab1        1   330 (0)    BE426763At01P067C02P067C081R1_039.ab1        1   330 (58) *
Merge:(0)    0   -0.5 0.4 (2,1:336)  218  8.14 0.65 0.00  BE426763At01P067C02P067C081R1_039.ab1       31   337 (51)  C BE426763At01P067C02P067C081F1_039.ab1   (0)   309     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0
-0.5       1        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  324 nodes

 139 str. conn. components

Path
    1    BE426763At01P067C02P067C081R1_039.ab1     1 
   88    BE426763At01P067C02P067C081R1_056.ab1    88 
   90  C BE426763At01P067C02P067C081F1_039.ab1   250 
   94    BE426763At01P067C02P067C081R1_056.ab1    94 
  110    BE426763At01P067C02P067C081R1_039.ab1   110 
  206    BE426763At01P067C02P067C081R1_056.ab1   206 
  210    BE426763At01P067C02P067C081R1_039.ab1   210 
  211  C BE426763At01P067C02P067C081F1_039.ab1   127 
  214    BE426763At01P067C02P067C081R1_039.ab1   214 
  222    BE426763At01P067C02P067C081R1_056.ab1   222 
  226    BE426763At01P067C02P067C081R1_039.ab1   226 
  234    BE426763At01P067C02P067C081R1_056.ab1   234 
  238    BE426763At01P067C02P067C081R1_039.ab1   238 
  246    BE426763At01P067C02P067C081R1_056.ab1   246 
  250    BE426763At01P067C02P067C081R1_039.ab1   250 
  306    BE426763At01P067C02P067C081R1_056.ab1   306 
  310    BE426763At01P067C02P067C081R1_039.ab1   310 
Contig length: old 388, new 388

Contig length: old 388, new 388
New start: 0 
S Change at: 42; seg lengths: entry 1, contig 1
S Change at: 99; seg lengths: entry 4, contig 4
S Change at: 315; seg lengths: entry 1, contig 1
S Change at: 318; seg lengths: entry 1, contig 1