No. words: 1093; after pruning: 1067


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:385)  373  0.00 0.00 0.26  BE426763Ld01P067C02P067C081F1_041.ab1        1   386 (175)  C BE426763Ld01P067C02P067C081R1_041.ab1   (147)   385     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1  C BE426763Ld01P067C02P067C081R1_041.ab1   532 
  183    BE426763Ld01P067C02P067C081F1_041.ab1    36 
  187  C BE426763Ld01P067C02P067C081R1_041.ab1   346 
  207    BE426763Ld01P067C02P067C081F1_041.ab1    60 
  215  C BE426763Ld01P067C02P067C081R1_041.ab1   318 
  223    BE426763Ld01P067C02P067C081F1_041.ab1    76 
  227  C BE426763Ld01P067C02P067C081R1_041.ab1   306 
  263    BE426763Ld01P067C02P067C081F1_041.ab1   116 
  271  C BE426763Ld01P067C02P067C081R1_041.ab1   262 
  291    BE426763Ld01P067C02P067C081F1_041.ab1   144 
  331  C BE426763Ld01P067C02P067C081R1_041.ab1   202 
  335    BE426763Ld01P067C02P067C081F1_041.ab1   188 
  355  C BE426763Ld01P067C02P067C081R1_041.ab1   178 
  359    BE426763Ld01P067C02P067C081F1_041.ab1   212 
  399  C BE426763Ld01P067C02P067C081R1_041.ab1   134 
  403    BE426763Ld01P067C02P067C081F1_041.ab1   256 
  443  C BE426763Ld01P067C02P067C081R1_041.ab1    90 
  447    BE426763Ld01P067C02P067C081F1_041.ab1   300 
  459  C BE426763Ld01P067C02P067C081R1_041.ab1    74 
  463    BE426763Ld01P067C02P067C081F1_041.ab1   316 
  483  C BE426763Ld01P067C02P067C081R1_041.ab1    50 
  487    BE426763Ld01P067C02P067C081F1_041.ab1   340 
  515  C BE426763Ld01P067C02P067C081R1_041.ab1    18 
  519    BE426763Ld01P067C02P067C081F1_041.ab1   372 
Contig length: old 707, new 708

Contig length: old 708, new 708
New start: 0