No. words: 627; after pruning: 601


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)   77   -5.9 -5.9 (1,1:419)   23 18.29 0.00 0.00  BE442638At02P103D03P103F091F1_052.ab1      262   343 (124)  C BE442638At02P103D03P103F091R1_052.ab1   (1)   159    78 *
  Worst pair: offset 0 
LLR breakdown: discreps: -3.7 (<20 part: -3.7 (#=15), >20:0.0 (#=0); in HQ: -3.7, out HQ 0.0), match: 1.5  trail: -3.3  lead: -0.4  total: -5.9   23 18.29 0.00 0.00  BE442638At02P103D03P103F091F1_052.ab1      262   343 (124)  C BE442638At02P103D03P103F091R1_052.ab1   (1)   159    78 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.9       0        1

Gap   # merges  # failures
 size
77       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BE442638At02P103D03P103F091R1_052.ab1     1 
Contig length: old 160, new 160

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE442638At02P103D03P103F091F1_052.ab1     1 
Contig length: old 467, new 467