No. words: 1086; after pruning: 1060


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.1 (1,1:413)  395  0.00 0.24 0.24  BE442875Ld09P003B06B12F1_009.ab1        1   412 (139)  C BE442875Ld09P003B06B12R1_009.ab1   (121)   414     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C BE442875Ld09P003B06B12R1_009.ab1   535 
  154    BE442875Ld09P003B06B12F1_009.ab1    32 
  166  C BE442875Ld09P003B06B12R1_009.ab1   370 
  174    BE442875Ld09P003B06B12F1_009.ab1    52 
  178  C BE442875Ld09P003B06B12R1_009.ab1   358 
  186    BE442875Ld09P003B06B12F1_009.ab1    64 
  194  C BE442875Ld09P003B06B12R1_009.ab1   342 
  206    BE442875Ld09P003B06B12F1_009.ab1    84 
  226  C BE442875Ld09P003B06B12R1_009.ab1   310 
  230    BE442875Ld09P003B06B12F1_009.ab1   108 
  246  C BE442875Ld09P003B06B12R1_009.ab1   290 
  254    BE442875Ld09P003B06B12F1_009.ab1   132 
  270  C BE442875Ld09P003B06B12R1_009.ab1   266 
  274    BE442875Ld09P003B06B12F1_009.ab1   152 
  290  C BE442875Ld09P003B06B12R1_009.ab1   246 
  310    BE442875Ld09P003B06B12F1_009.ab1   188 
  326  C BE442875Ld09P003B06B12R1_009.ab1   210 
  342    BE442875Ld09P003B06B12F1_009.ab1   220 
  366  C BE442875Ld09P003B06B12R1_009.ab1   170 
  446    BE442875Ld09P003B06B12F1_009.ab1   324 
Contig length: old 672, new 673

Contig length: old 673, new 673
New start: 0