No. words: 1258; after pruning: 1232


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:469)  455  0.21 0.00 0.21  BE443049Ld02P078D01P078D071F1_025.ab1        1   470 (177)  C BE443049Ld02P078D01P078D071R1_025.ab1   (142)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C BE443049Ld02P078D01P078D071R1_025.ab1   611 
  166    BE443049Ld02P078D01P078D071F1_025.ab1    24 
  174  C BE443049Ld02P078D01P078D071R1_025.ab1   438 
  222    BE443049Ld02P078D01P078D071F1_025.ab1    80 
  226  C BE443049Ld02P078D01P078D071R1_025.ab1   386 
  486    BE443049Ld02P078D01P078D071F1_025.ab1   344 
  566  C BE443049Ld02P078D01P078D071R1_025.ab1    46 
  570    BE443049Ld02P078D01P078D071F1_025.ab1   428 
  582  C BE443049Ld02P078D01P078D071R1_025.ab1    30 
  590    BE443049Ld02P078D01P078D071F1_025.ab1   448 
  594  C BE443049Ld02P078D01P078D071R1_025.ab1    18 
  598    BE443049Ld02P078D01P078D071F1_025.ab1   456 
Contig length: old 788, new 789

Contig length: old 789, new 789
New start: 0