No. words: 3011; after pruning: 2945


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.5 (1,1:991)  812  0.24 0.00 0.00  BE443955At02P078G01P078G071F1_078.ab1       78   910 (0)  C BE443955At02P078G01P078G071R1_078.ab1   (0)   915    83 *
Merge:(0)    0    0.0 12.9 (2,1:3)  580  0.17 0.00 0.17  BE443955At02P078G01P078G071F1_078.ab1        3   600 (310)    BE443955At02P078G01P078G071F1_007.ab1        1   597 (0) *
Merge:(0)    2    0.0 9.9 (3,1:989)  561  0.34 0.00 0.17  BE443955At02P078G01P078G071R1_078.ab1        5   592 (323)    BE443955At02P078G01P078G071R1_007.ab1        3   589 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 2       1        0

Offset
  0       4 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1596 nodes

 334 str. conn. components

Path
    1    BE443955At02P078G01P078G071F1_078.ab1     1 
  437  C BE443955At02P078G01P078G071R1_078.ab1   556 
  445    BE443955At02P078G01P078G071F1_078.ab1   445 
  629  C BE443955At02P078G01P078G071R1_078.ab1   364 
  925  C BE443955At02P078G01P078G071R1_007.ab1    66 
  929  C BE443955At02P078G01P078G071R1_078.ab1    64 
  965  C BE443955At02P078G01P078G071R1_007.ab1    26 
  969  C BE443955At02P078G01P078G071R1_078.ab1    24 
  977  C BE443955At02P078G01P078G071R1_007.ab1    14 
  985  C BE443955At02P078G01P078G071R1_078.ab1     8 
Contig length: old 992, new 992

Contig length: old 992, new 992
New start: 0