No. words: 1574; after pruning: 1548


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:650)  612  0.77 0.00 0.00  BE445328Ld02P129E03P129E091F1_069.ab1        1   651 (142)  C BE445328Ld02P129E03P129E091R1_069.ab1   (130)   651     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C BE445328Ld02P129E03P129E091R1_069.ab1   781 
  204    BE445328Ld02P129E03P129E091F1_069.ab1    74 
  212  C BE445328Ld02P129E03P129E091R1_069.ab1   570 
  224    BE445328Ld02P129E03P129E091F1_069.ab1    94 
  236  C BE445328Ld02P129E03P129E091R1_069.ab1   546 
  280    BE445328Ld02P129E03P129E091F1_069.ab1   150 
  284  C BE445328Ld02P129E03P129E091R1_069.ab1   498 
  308    BE445328Ld02P129E03P129E091F1_069.ab1   178 
  324  C BE445328Ld02P129E03P129E091R1_069.ab1   458 
  328    BE445328Ld02P129E03P129E091F1_069.ab1   198 
  332  C BE445328Ld02P129E03P129E091R1_069.ab1   450 
  384    BE445328Ld02P129E03P129E091F1_069.ab1   254 
  388  C BE445328Ld02P129E03P129E091R1_069.ab1   394 
  392    BE445328Ld02P129E03P129E091F1_069.ab1   262 
  396  C BE445328Ld02P129E03P129E091R1_069.ab1   386 
  604    BE445328Ld02P129E03P129E091F1_069.ab1   474 
  612  C BE445328Ld02P129E03P129E091R1_069.ab1   170 
  632    BE445328Ld02P129E03P129E091F1_069.ab1   502 
  640  C BE445328Ld02P129E03P129E091R1_069.ab1   142 
  668    BE445328Ld02P129E03P129E091F1_069.ab1   538 
  684  C BE445328Ld02P129E03P129E091R1_069.ab1    98 
  688    BE445328Ld02P129E03P129E091F1_069.ab1   558 
  696  C BE445328Ld02P129E03P129E091R1_069.ab1    86 
  700    BE445328Ld02P129E03P129E091F1_069.ab1   570 
Contig length: old 923, new 923

Contig length: old 923, new 923
New start: 0