No. words: 1385; after pruning: 1359


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:532)  521  0.19 0.00 0.19  BE445328Ld12P129H03P129H091F1_041.ab1        1   533 (144)  C BE445328Ld12P129H03P129H091R1_041.ab1   (176)   532     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C BE445328Ld12P129H03P129H091R1_041.ab1   708 
  252    BE445328Ld12P129H03P129H091F1_041.ab1    76 
  260  C BE445328Ld12P129H03P129H091R1_041.ab1   449 
  296    BE445328Ld12P129H03P129H091F1_041.ab1   120 
  300  C BE445328Ld12P129H03P129H091R1_041.ab1   409 
  344    BE445328Ld12P129H03P129H091F1_041.ab1   168 
  352  C BE445328Ld12P129H03P129H091R1_041.ab1   357 
  368    BE445328Ld12P129H03P129H091F1_041.ab1   192 
  388  C BE445328Ld12P129H03P129H091R1_041.ab1   321 
  436    BE445328Ld12P129H03P129H091F1_041.ab1   260 
  440  C BE445328Ld12P129H03P129H091R1_041.ab1   269 
  460    BE445328Ld12P129H03P129H091F1_041.ab1   284 
  472  C BE445328Ld12P129H03P129H091R1_041.ab1   237 
  496    BE445328Ld12P129H03P129H091F1_041.ab1   320 
  508  C BE445328Ld12P129H03P129H091R1_041.ab1   201 
  516    BE445328Ld12P129H03P129H091F1_041.ab1   340 
  524  C BE445328Ld12P129H03P129H091R1_041.ab1   185 
  544    BE445328Ld12P129H03P129H091F1_041.ab1   368 
  560  C BE445328Ld12P129H03P129H091R1_041.ab1   149 
  576    BE445328Ld12P129H03P129H091F1_041.ab1   400 
  584  C BE445328Ld12P129H03P129H091R1_041.ab1   125 
  588    BE445328Ld12P129H03P129H091F1_041.ab1   412 
  632  C BE445328Ld12P129H03P129H091R1_041.ab1    77 
  636    BE445328Ld12P129H03P129H091F1_041.ab1   460 
Contig length: old 852, new 853

Contig length: old 853, new 853
New start: 0