No. words: 1117; after pruning: 1091


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.2 (1,1:542)  494  1.30 0.00 0.37  BE445348As01P078A02P078A081F1_090.ab1        5   544 (17)  C BE445348As01P078A02P078A081R1_090.ab1   (18)   538     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE445348As01P078A02P078A081R1_090.ab1   556 
   22    BE445348As01P078A02P078A081F1_090.ab1     8 
   26  C BE445348As01P078A02P078A081R1_090.ab1   531 
   30    BE445348As01P078A02P078A081F1_090.ab1    16 
   50  C BE445348As01P078A02P078A081R1_090.ab1   507 
   58    BE445348As01P078A02P078A081F1_090.ab1    44 
  118  C BE445348As01P078A02P078A081R1_090.ab1   439 
  122    BE445348As01P078A02P078A081F1_090.ab1   108 
  150  C BE445348As01P078A02P078A081R1_090.ab1   407 
  170    BE445348As01P078A02P078A081F1_090.ab1   156 
  190  C BE445348As01P078A02P078A081R1_090.ab1   367 
  202    BE445348As01P078A02P078A081F1_090.ab1   188 
  210  C BE445348As01P078A02P078A081R1_090.ab1   347 
  226    BE445348As01P078A02P078A081F1_090.ab1   212 
  246  C BE445348As01P078A02P078A081R1_090.ab1   311 
  250    BE445348As01P078A02P078A081F1_090.ab1   236 
  262  C BE445348As01P078A02P078A081R1_090.ab1   295 
  274    BE445348As01P078A02P078A081F1_090.ab1   260 
  294  C BE445348As01P078A02P078A081R1_090.ab1   263 
  302    BE445348As01P078A02P078A081F1_090.ab1   288 
  318  C BE445348As01P078A02P078A081R1_090.ab1   239 
  350    BE445348As01P078A02P078A081F1_090.ab1   336 
  354  C BE445348As01P078A02P078A081R1_090.ab1   203 
  358    BE445348As01P078A02P078A081F1_090.ab1   344 
  399  C BE445348As01P078A02P078A081R1_090.ab1   158 
  403    BE445348As01P078A02P078A081F1_090.ab1   389 
  432  C BE445348As01P078A02P078A081R1_090.ab1   125 
  448    BE445348As01P078A02P078A081F1_090.ab1   434 
  469  C BE445348As01P078A02P078A081R1_090.ab1    88 
  485    BE445348As01P078A02P078A081F1_090.ab1   471 
  493  C BE445348As01P078A02P078A081R1_090.ab1    64 
  501    BE445348As01P078A02P078A081F1_090.ab1   487 
  505  C BE445348As01P078A02P078A081R1_090.ab1    52 
  509    BE445348As01P078A02P078A081F1_090.ab1   495 
  525  C BE445348As01P078A02P078A081R1_090.ab1    32 
  542    BE445348As01P078A02P078A081F1_090.ab1   529 
Contig length: old 574, new 574

Contig length: old 574, new 574
New start: 0 
D Change at: 19; seg lengths: entry 0, contig 1
S Change at: 345; seg lengths: entry 1, contig 1
I Change at: 537; seg lengths: entry 2, contig 1