No. words: 1105; after pruning: 1079


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.0 (1,1:544)  512  0.19 0.00 0.37  BE445348As02P078A02P078A081F1_088.ab1        8   547 (17)  C BE445348As02P078A02P078A081R1_088.ab1   (3)   538     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1    BE445348As02P078A02P078A081F1_088.ab1     1 
   15  C BE445348As02P078A02P078A081R1_088.ab1   531 
   19    BE445348As02P078A02P078A081F1_088.ab1    19 
   39  C BE445348As02P078A02P078A081R1_088.ab1   507 
   51    BE445348As02P078A02P078A081F1_088.ab1    51 
  143  C BE445348As02P078A02P078A081R1_088.ab1   403 
  147    BE445348As02P078A02P078A081F1_088.ab1   147 
  151  C BE445348As02P078A02P078A081R1_088.ab1   395 
  155    BE445348As02P078A02P078A081F1_088.ab1   155 
  179  C BE445348As02P078A02P078A081R1_088.ab1   367 
  191    BE445348As02P078A02P078A081F1_088.ab1   191 
  199  C BE445348As02P078A02P078A081R1_088.ab1   347 
  203    BE445348As02P078A02P078A081F1_088.ab1   203 
  207  C BE445348As02P078A02P078A081R1_088.ab1   339 
  211    BE445348As02P078A02P078A081F1_088.ab1   211 
  239  C BE445348As02P078A02P078A081R1_088.ab1   307 
  243    BE445348As02P078A02P078A081F1_088.ab1   243 
  251  C BE445348As02P078A02P078A081R1_088.ab1   295 
  259    BE445348As02P078A02P078A081F1_088.ab1   259 
  283  C BE445348As02P078A02P078A081R1_088.ab1   263 
  291    BE445348As02P078A02P078A081F1_088.ab1   291 
  311  C BE445348As02P078A02P078A081R1_088.ab1   235 
  331    BE445348As02P078A02P078A081F1_088.ab1   331 
  343  C BE445348As02P078A02P078A081R1_088.ab1   203 
  347    BE445348As02P078A02P078A081F1_088.ab1   347 
  388  C BE445348As02P078A02P078A081R1_088.ab1   158 
  392    BE445348As02P078A02P078A081F1_088.ab1   392 
  420  C BE445348As02P078A02P078A081R1_088.ab1   126 
  432    BE445348As02P078A02P078A081F1_088.ab1   432 
  452  C BE445348As02P078A02P078A081R1_088.ab1    94 
  472    BE445348As02P078A02P078A081F1_088.ab1   472 
  484  C BE445348As02P078A02P078A081R1_088.ab1    62 
  488    BE445348As02P078A02P078A081F1_088.ab1   488 
  496  C BE445348As02P078A02P078A081R1_088.ab1    50 
  504    BE445348As02P078A02P078A081F1_088.ab1   504 
  512  C BE445348As02P078A02P078A081R1_088.ab1    34 
  520    BE445348As02P078A02P078A081F1_088.ab1   520 
Contig length: old 564, new 564

Contig length: old 564, new 564
New start: 0