No. words: 1320; after pruning: 1294


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.7 (1,1:518)  496  0.39 0.19 0.00  BE445508Ld06P078C02P078C081F1_051.ab1        1   518 (130)  C BE445508Ld06P078C02P078C081R1_051.ab1   (152)   520     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C BE445508Ld06P078C02P078C081R1_051.ab1   672 
  241    BE445508Ld06P078C02P078C081F1_051.ab1    88 
  249  C BE445508Ld06P078C02P078C081R1_051.ab1   424 
  257    BE445508Ld06P078C02P078C081F1_051.ab1   104 
  269  C BE445508Ld06P078C02P078C081R1_051.ab1   404 
  289    BE445508Ld06P078C02P078C081F1_051.ab1   136 
  345  C BE445508Ld06P078C02P078C081R1_051.ab1   328 
  377    BE445508Ld06P078C02P078C081F1_051.ab1   224 
  453  C BE445508Ld06P078C02P078C081R1_051.ab1   220 
  545    BE445508Ld06P078C02P078C081F1_051.ab1   392 
  569  C BE445508Ld06P078C02P078C081R1_051.ab1   104 
  577    BE445508Ld06P078C02P078C081F1_051.ab1   424 
  637  C BE445508Ld06P078C02P078C081R1_051.ab1    36 
  641    BE445508Ld06P078C02P078C081F1_051.ab1   488 
  649  C BE445508Ld06P078C02P078C081R1_051.ab1    24 
  653    BE445508Ld06P078C02P078C081F1_051.ab1   500 
Contig length: old 801, new 801

Contig length: old 801, new 801
New start: 0