No. words: 1413; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.6 (1,1:823)  562  0.17 0.00 0.17  BE446087Ta18P052H03P016F091F1_061.ab1        2   589 (0)  C BE446087Ta18P052H03P016F091R1_061.ab1   (2)   822   236 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C BE446087Ta18P052H03P016F091R1_061.ab1   824 
    6    BE446087Ta18P052H03P016F091F1_061.ab1     5 
   47  C BE446087Ta18P052H03P016F091R1_061.ab1   779 
   57    BE446087Ta18P052H03P016F091F1_061.ab1    56 
  333  C BE446087Ta18P052H03P016F091R1_061.ab1   493 
  353    BE446087Ta18P052H03P016F091F1_061.ab1   352 
  409  C BE446087Ta18P052H03P016F091R1_061.ab1   417 
  425    BE446087Ta18P052H03P016F091F1_061.ab1   424 
  429  C BE446087Ta18P052H03P016F091R1_061.ab1   397 
  437    BE446087Ta18P052H03P016F091F1_061.ab1   436 
  449  C BE446087Ta18P052H03P016F091R1_061.ab1   377 
  453    BE446087Ta18P052H03P016F091F1_061.ab1   452 
  457  C BE446087Ta18P052H03P016F091R1_061.ab1   369 
  509    BE446087Ta18P052H03P016F091F1_061.ab1   508 
  513  C BE446087Ta18P052H03P016F091R1_061.ab1   313 
Contig length: old 824, new 825

Contig length: old 825, new 825
New start: 0