No. words: 1332; after pruning: 1306


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.9 (1,1:499)  488  0.00 0.20 0.20  BE488609Ld08P103B04P103B101F2_089.ab1        2   500 (160)  C BE488609Ld08P103B04P103B101R2_089.ab1   (173)   499     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE488609Ld08P103B04P103B101R2_089.ab1   672 
  235    BE488609Ld08P103B04P103B101F2_089.ab1    62 
  239  C BE488609Ld08P103B04P103B101R2_089.ab1   434 
  243    BE488609Ld08P103B04P103B101F2_089.ab1    70 
  247  C BE488609Ld08P103B04P103B101R2_089.ab1   426 
  275    BE488609Ld08P103B04P103B101F2_089.ab1   102 
  283  C BE488609Ld08P103B04P103B101R2_089.ab1   390 
  311    BE488609Ld08P103B04P103B101F2_089.ab1   138 
  391  C BE488609Ld08P103B04P103B101R2_089.ab1   282 
  431    BE488609Ld08P103B04P103B101F2_089.ab1   258 
Contig length: old 832, new 833

Contig length: old 833, new 833
New start: 0