No. words: 1311; after pruning: 1285


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.4 (1,1:490)  482  0.00 0.20 0.00  BE488609Ld22P103B04P103B101F1_020.ab1        4   491 (160)  C BE488609Ld22P103B04P103B101R1_020.ab1   (171)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C BE488609Ld22P103B04P103B101R1_020.ab1   660 
  301    BE488609Ld22P103B04P103B101F1_020.ab1   132 
  309  C BE488609Ld22P103B04P103B101R1_020.ab1   352 
  333    BE488609Ld22P103B04P103B101F1_020.ab1   164 
Contig length: old 820, new 820

Contig length: old 820, new 820
New start: 0