No. words: 1776; after pruning: 1724


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:527)  516  0.00 0.38 0.00  BE490085Ld12P067E02P067E081F1_067.ab1        1   527 (144)  C BE490085Ld12P067E02P067E081R1_067.ab1   (170)   529     1 *
Merge:(0)    0    0.0 0.8 (1,1:36)   37  0.00 0.00 0.00  BE490085Ld12P067E02P067E081F1_023.ab1        1    37 (154)  C BE490085Ld12P067E02P067E081R1_023.ab1   (178)    37     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    
 -171  300  670 668    260     S 300- 559
Fail: (1)  260   -4.6 -4.6 (2,2:-478)  109  0.00 0.00 0.00  BE490085Ld12P067E02P067E081F1_023.ab1       83   191 (0)    BE490085Ld12P067E02P067E081F1_067.ab1      561   669 (2)  
  Bypassed reads: contig1: none; contig2: none
  Worst pair: offset 0 
LLR breakdown: discreps: 0.0 (<20 part: 0.0 (#=0), >20:0.0 (#=0); in HQ: 0.0, out HQ 0.0), match: 2.4  lead: -7.1  total: -4.7  109  0.00 0.00 0.00  BE490085Ld12P067E02P067E081F1_023.ab1       83   191 (0)    BE490085Ld12P067E02P067E081F1_067.ab1      561   669 (2)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.6       0        1

Gap   # merges  # failures
 size
260       0        1

Offset
  0       1 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  260 nodes

 132 str. conn. components

Path
    1  C BE490085Ld12P067E02P067E081R1_067.ab1   699 
  255    BE490085Ld12P067E02P067E081F1_067.ab1    83 
  259  C BE490085Ld12P067E02P067E081R1_067.ab1   441 
  315    BE490085Ld12P067E02P067E081F1_067.ab1   143 
  359  C BE490085Ld12P067E02P067E081R1_067.ab1   341 
  439    BE490085Ld12P067E02P067E081F1_067.ab1   267 
  447  C BE490085Ld12P067E02P067E081R1_067.ab1   253 
  479    BE490085Ld12P067E02P067E081F1_067.ab1   307 
  495  C BE490085Ld12P067E02P067E081R1_067.ab1   205 
  547    BE490085Ld12P067E02P067E081F1_067.ab1   375 
  567  C BE490085Ld12P067E02P067E081R1_067.ab1   133 
  583    BE490085Ld12P067E02P067E081F1_067.ab1   411 
  587  C BE490085Ld12P067E02P067E081R1_067.ab1   113 
  599    BE490085Ld12P067E02P067E081F1_067.ab1   427 
Contig length: old 842, new 843

Contig 1:  20 nodes

 12 str. conn. components

Path
    1  C BE490085Ld12P067E02P067E081R1_023.ab1   215 
  206    BE490085Ld12P067E02P067E081F1_023.ab1    28 
Contig length: old 369, new 369

Contig length: old 843, new 843
New start: 0 

Contig length: old 369, new 369
New start: 0