No. words: 1518; after pruning: 1492


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:598)  575  0.00 0.17 0.00  BE490274Ld09P129C04P129C101F1_040.ab1        1   599 (144)  C BE490274Ld09P129C04P129C101R1_040.ab1   (175)   600     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C BE490274Ld09P129C04P129C101R1_040.ab1   775 
  240    BE490274Ld09P129C04P129C101F1_040.ab1    64 
  256  C BE490274Ld09P129C04P129C101R1_040.ab1   520 
  260    BE490274Ld09P129C04P129C101F1_040.ab1    84 
  280  C BE490274Ld09P129C04P129C101R1_040.ab1   496 
  284    BE490274Ld09P129C04P129C101F1_040.ab1   108 
  312  C BE490274Ld09P129C04P129C101R1_040.ab1   464 
  316    BE490274Ld09P129C04P129C101F1_040.ab1   140 
  324  C BE490274Ld09P129C04P129C101R1_040.ab1   452 
  332    BE490274Ld09P129C04P129C101F1_040.ab1   156 
  468  C BE490274Ld09P129C04P129C101R1_040.ab1   308 
  480    BE490274Ld09P129C04P129C101F1_040.ab1   304 
  492  C BE490274Ld09P129C04P129C101R1_040.ab1   284 
  500    BE490274Ld09P129C04P129C101F1_040.ab1   324 
  508  C BE490274Ld09P129C04P129C101R1_040.ab1   268 
  572    BE490274Ld09P129C04P129C101F1_040.ab1   396 
  580  C BE490274Ld09P129C04P129C101R1_040.ab1   196 
  584    BE490274Ld09P129C04P129C101F1_040.ab1   408 
  588  C BE490274Ld09P129C04P129C101R1_040.ab1   188 
  604    BE490274Ld09P129C04P129C101F1_040.ab1   428 
  608  C BE490274Ld09P129C04P129C101R1_040.ab1   168 
  612    BE490274Ld09P129C04P129C101F1_040.ab1   436 
  616  C BE490274Ld09P129C04P129C101R1_040.ab1   160 
  636    BE490274Ld09P129C04P129C101F1_040.ab1   460 
  644  C BE490274Ld09P129C04P129C101R1_040.ab1   132 
  660    BE490274Ld09P129C04P129C101F1_040.ab1   484 
  668  C BE490274Ld09P129C04P129C101R1_040.ab1   108 
  696    BE490274Ld09P129C04P129C101F1_040.ab1   520 
  704  C BE490274Ld09P129C04P129C101R1_040.ab1    72 
  712    BE490274Ld09P129C04P129C101F1_040.ab1   536 
Contig length: old 919, new 919

Contig length: old 919, new 919
New start: 0