No. words: 1493; after pruning: 1467


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
 -766  -595  0 130    92     S -595- -589, E -91- 0
Fail: (1)   92    0.0 3.1 (1,1:595)  485  0.20 0.00 0.00  BE490613Ld11P129F04P129F101F1_060.ab1        8   504 (222)  C BE490613Ld11P129F04P129F101R1_060.ab1   (178)   589    93 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
92       0        1

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)   92    0.0 3.1 (1,1:595)  485  0.20 0.00 0.00  BE490613Ld11P129F04P129F101F1_060.ab1        8   504 (222)  C BE490613Ld11P129F04P129F101R1_060.ab1   (178)   589    93 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
92       1        0

Offset
  0       1 

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE490613Ld11P129F04P129F101R1_060.ab1   767 
  205    BE490613Ld11P129F04P129F101F1_060.ab1    34 
  221  C BE490613Ld11P129F04P129F101R1_060.ab1   547 
  225    BE490613Ld11P129F04P129F101F1_060.ab1    54 
  229  C BE490613Ld11P129F04P129F101R1_060.ab1   539 
  233    BE490613Ld11P129F04P129F101F1_060.ab1    62 
  285  C BE490613Ld11P129F04P129F101R1_060.ab1   483 
  293    BE490613Ld11P129F04P129F101F1_060.ab1   122 
  317  C BE490613Ld11P129F04P129F101R1_060.ab1   451 
  321    BE490613Ld11P129F04P129F101F1_060.ab1   150 
  373  C BE490613Ld11P129F04P129F101R1_060.ab1   395 
  381    BE490613Ld11P129F04P129F101F1_060.ab1   210 
  405  C BE490613Ld11P129F04P129F101R1_060.ab1   363 
  409    BE490613Ld11P129F04P129F101F1_060.ab1   238 
  413  C BE490613Ld11P129F04P129F101R1_060.ab1   355 
  449    BE490613Ld11P129F04P129F101F1_060.ab1   278 
  453  C BE490613Ld11P129F04P129F101R1_060.ab1   315 
  457    BE490613Ld11P129F04P129F101F1_060.ab1   286 
  461  C BE490613Ld11P129F04P129F101R1_060.ab1   307 
  477    BE490613Ld11P129F04P129F101F1_060.ab1   306 
  505  C BE490613Ld11P129F04P129F101R1_060.ab1   263 
  529    BE490613Ld11P129F04P129F101F1_060.ab1   358 
  533  C BE490613Ld11P129F04P129F101R1_060.ab1   235 
  537    BE490613Ld11P129F04P129F101F1_060.ab1   366 
  541  C BE490613Ld11P129F04P129F101R1_060.ab1   227 
  545    BE490613Ld11P129F04P129F101F1_060.ab1   374 
  569  C BE490613Ld11P129F04P129F101R1_060.ab1   199 
  573    BE490613Ld11P129F04P129F101F1_060.ab1   402 
  581  C BE490613Ld11P129F04P129F101R1_060.ab1   187 
  585    BE490613Ld11P129F04P129F101F1_060.ab1   414 
  609  C BE490613Ld11P129F04P129F101R1_060.ab1   159 
  621    BE490613Ld11P129F04P129F101F1_060.ab1   450 
  625  C BE490613Ld11P129F04P129F101R1_060.ab1   143 
  629    BE490613Ld11P129F04P129F101F1_060.ab1   458 
  645  C BE490613Ld11P129F04P129F101R1_060.ab1   123 
  649    BE490613Ld11P129F04P129F101F1_060.ab1   478 
Contig length: old 897, new 897

Contig length: old 897, new 897
New start: 0