No. words: 754; after pruning: 728


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   14   -4.0 -4.0 (1,1:114)   69  9.18 0.00 0.00  BE490765Ld04P016D05P016D111F1_053.ab1        4   101 (155)  C BE490765Ld04P016D05P016D111R1_053.ab1   (386)   112    15 *
  Worst pair: offset 0 
LLR breakdown: discreps: -5.0 (<20 part: -5.0 (#=9), >20:0.0 (#=0); in HQ: -5.0, out HQ 0.0), match: 2.0  trail: -0.6  lead: -0.4  total: -4.0   69  9.18 0.00 0.00  BE490765Ld04P016D05P016D111F1_053.ab1        4   101 (155)  C BE490765Ld04P016D05P016D111R1_053.ab1   (386)   112    15 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.0       1        0

Gap   # merges  # failures
 size
14       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  26 nodes

 15 str. conn. components

Path
    1  C BE490765Ld04P016D05P016D111R1_053.ab1   498 
  467    BE490765Ld04P016D05P016D111F1_053.ab1    84 
Contig length: old 639, new 639

Contig length: old 639, new 639
New start: 0 
S Change at: 474; seg lengths: entry 4, contig 4