No. words: 1696; after pruning: 1656


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:976)  704  0.14 0.00 0.00  BE494474Ld01P078F02P078F081F1_080.ab1      102   820 (0)  C BE494474Ld01P078F02P078F081R1_080.ab1   (0)   876   158 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1    BE494474Ld01P078F02P078F081F1_080.ab1     1 
  278  C BE494474Ld01P078F02P078F081R1_080.ab1   700 
  282    BE494474Ld01P078F02P078F081F1_080.ab1   282 
  286  C BE494474Ld01P078F02P078F081R1_080.ab1   692 
  294    BE494474Ld01P078F02P078F081F1_080.ab1   294 
  298  C BE494474Ld01P078F02P078F081R1_080.ab1   680 
  310    BE494474Ld01P078F02P078F081F1_080.ab1   310 
  314  C BE494474Ld01P078F02P078F081R1_080.ab1   664 
  318    BE494474Ld01P078F02P078F081F1_080.ab1   318 
  322  C BE494474Ld01P078F02P078F081R1_080.ab1   656 
  326    BE494474Ld01P078F02P078F081F1_080.ab1   326 
  350  C BE494474Ld01P078F02P078F081R1_080.ab1   628 
Contig length: old 977, new 977

Contig length: old 977, new 977
New start: 0