No. words: 1662; after pruning: 1608


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:985)  652  0.44 0.00 0.00  BE494474Ld03P078F02P078F081F1_076.ab1      102   777 (0)  C BE494474Ld03P078F02P078F081R1_076.ab1   (0)   885   210 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1    BE494474Ld03P078F02P078F081F1_076.ab1     1 
  222  C BE494474Ld03P078F02P078F081R1_076.ab1   765 
  226    BE494474Ld03P078F02P078F081F1_076.ab1   226 
  242  C BE494474Ld03P078F02P078F081R1_076.ab1   745 
  246    BE494474Ld03P078F02P078F081F1_076.ab1   246 
  266  C BE494474Ld03P078F02P078F081R1_076.ab1   721 
  270    BE494474Ld03P078F02P078F081F1_076.ab1   270 
  282  C BE494474Ld03P078F02P078F081R1_076.ab1   705 
  352    BE494474Ld03P078F02P078F081F1_076.ab1   352 
  356  C BE494474Ld03P078F02P078F081R1_076.ab1   631 
  368    BE494474Ld03P078F02P078F081F1_076.ab1   368 
  372  C BE494474Ld03P078F02P078F081R1_076.ab1   615 
  396    BE494474Ld03P078F02P078F081F1_076.ab1   396 
  400  C BE494474Ld03P078F02P078F081R1_076.ab1   587 
  448    BE494474Ld03P078F02P078F081F1_076.ab1   448 
  452  C BE494474Ld03P078F02P078F081R1_076.ab1   535 
  456    BE494474Ld03P078F02P078F081F1_076.ab1   456 
  464  C BE494474Ld03P078F02P078F081R1_076.ab1   523 
  524    BE494474Ld03P078F02P078F081F1_076.ab1   524 
  528  C BE494474Ld03P078F02P078F081R1_076.ab1   459 
Contig length: old 986, new 986

Contig length: old 986, new 986
New start: 0