No. words: 1760; after pruning: 1734


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:972)  774  0.00 0.00 0.00  BE494474Ld09P078F02P078F081F1_095.ab1       85   871 (0)  C BE494474Ld09P078F02P078F081R1_095.ab1   (0)   889   103 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1    BE494474Ld09P078F02P078F081F1_095.ab1     1 
  172  C BE494474Ld09P078F02P078F081R1_095.ab1   802 
  176    BE494474Ld09P078F02P078F081F1_095.ab1   176 
  224  C BE494474Ld09P078F02P078F081R1_095.ab1   750 
  236    BE494474Ld09P078F02P078F081F1_095.ab1   236 
  252  C BE494474Ld09P078F02P078F081R1_095.ab1   722 
  256    BE494474Ld09P078F02P078F081F1_095.ab1   256 
  260  C BE494474Ld09P078F02P078F081R1_095.ab1   714 
  264    BE494474Ld09P078F02P078F081F1_095.ab1   264 
  272  C BE494474Ld09P078F02P078F081R1_095.ab1   702 
  288    BE494474Ld09P078F02P078F081F1_095.ab1   288 
  292  C BE494474Ld09P078F02P078F081R1_095.ab1   682 
  304    BE494474Ld09P078F02P078F081F1_095.ab1   304 
  308  C BE494474Ld09P078F02P078F081R1_095.ab1   666 
Contig length: old 973, new 973

Contig length: old 973, new 973
New start: 0