No. words: 1080; after pruning: 1054


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:905)  169  0.57 0.00 0.00  BE494807At02P078G02P078G081F1_048.ab1      417   590 (0)  C BE494807At02P078G02P078G081R1_048.ab1   (0)   490   317 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1    BE494807At02P078G02P078G081F1_048.ab1     1 
  456  C BE494807At02P078G02P078G081R1_048.ab1   451 
  460    BE494807At02P078G02P078G081F1_048.ab1   460 
  468  C BE494807At02P078G02P078G081R1_048.ab1   439 
  480    BE494807At02P078G02P078G081F1_048.ab1   480 
  484  C BE494807At02P078G02P078G081R1_048.ab1   423 
  496    BE494807At02P078G02P078G081F1_048.ab1   496 
  508  C BE494807At02P078G02P078G081R1_048.ab1   399 
  564    BE494807At02P078G02P078G081F1_048.ab1   564 
  572  C BE494807At02P078G02P078G081R1_048.ab1   335 
Contig length: old 906, new 906

Contig length: old 906, new 906
New start: 0