No. words: 1597; after pruning: 1558


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.6 (1,1:362)  343  0.00 0.27 0.55  BE495304Ld05P016E05E11F1_012.scf        1   364 (179)  C BE495304Ld05P016E05E11R1_012.ab1   (148)   363     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C BE495304Ld05P016E05E11R1_012.ab1   511 
  152    BE495304Ld05P016E05E11F1_012.scf     4 
  160  C BE495304Ld05P016E05E11R1_012.ab1   352 
  170    BE495304Ld05P016E05E11F1_012.scf    21 
Contig length: old 691, new 692

Contig length: old 692, new 692
New start: 0