No. words: 1687; after pruning: 1661


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 13.9 (1,1:740)  703  0.00 0.14 0.00  BE498786Ld04P103F05P103F111F1_096.ab1        8   741 (104)  C BE498786Ld04P103F05P103F111R1_096.ab1   (107)   735     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C BE498786Ld04P103F05P103F111R1_096.ab1   842 
  125    BE498786Ld04P103F05P103F111F1_096.ab1    24 
  137  C BE498786Ld04P103F05P103F111R1_096.ab1   706 
  149    BE498786Ld04P103F05P103F111F1_096.ab1    48 
  173  C BE498786Ld04P103F05P103F111R1_096.ab1   670 
  197    BE498786Ld04P103F05P103F111F1_096.ab1    96 
  201  C BE498786Ld04P103F05P103F111R1_096.ab1   642 
  289    BE498786Ld04P103F05P103F111F1_096.ab1   188 
  305  C BE498786Ld04P103F05P103F111R1_096.ab1   538 
  597    BE498786Ld04P103F05P103F111F1_096.ab1   496 
  681  C BE498786Ld04P103F05P103F111R1_096.ab1   162 
  697    BE498786Ld04P103F05P103F111F1_096.ab1   596 
  761  C BE498786Ld04P103F05P103F111R1_096.ab1    82 
  765    BE498786Ld04P103F05P103F111F1_096.ab1   664 
  769  C BE498786Ld04P103F05P103F111R1_096.ab1    74 
  801    BE498786Ld04P103F05P103F111F1_096.ab1   700 
  809  C BE498786Ld04P103F05P103F111R1_096.ab1    34 
  833    BE498786Ld04P103F05P103F111F1_096.ab1   732 
Contig length: old 946, new 946

Contig length: old 946, new 946
New start: 0