No. words: 1409; after pruning: 1383


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 10.4 (1,1:547)  521  0.00 0.19 0.19  BE499309Ld02P026F08P026B111F1_083.ab1       10   548 (185)  C BE499309Ld02P026F08P026B111R1_083.ab1   (137)   539     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BE499309Ld02P026F08P026B111R1_083.ab1   676 
  543    BE499309Ld02P026F08P026B111F1_083.ab1   414 
  547  C BE499309Ld02P026F08P026B111R1_083.ab1   130 
  563    BE499309Ld02P026F08P026B111F1_083.ab1   434 
  567  C BE499309Ld02P026F08P026B111R1_083.ab1   110 
  575    BE499309Ld02P026F08P026B111F1_083.ab1   446 
  587  C BE499309Ld02P026F08P026B111R1_083.ab1    90 
  607    BE499309Ld02P026F08P026B111F1_083.ab1   478 
  611  C BE499309Ld02P026F08P026B111R1_083.ab1    66 
  627    BE499309Ld02P026F08P026B111F1_083.ab1   498 
  639  C BE499309Ld02P026F08P026B111R1_083.ab1    38 
  647    BE499309Ld02P026F08P026B111F1_083.ab1   518 
Contig length: old 861, new 862

Contig length: old 862, new 862
New start: 0