No. words: 1323; after pruning: 1297


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:527)  519  0.00 0.00 0.00  BE499309Ld04P026F08P026B111F1_015.ab1        1   528 (133)  C BE499309Ld04P026F08P026B111R1_015.ab1   (134)   528     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BE499309Ld04P026F08P026B111R1_015.ab1   662 
  170    BE499309Ld04P026F08P026B111F1_015.ab1    36 
  178  C BE499309Ld04P026F08P026B111R1_015.ab1   485 
  534    BE499309Ld04P026F08P026B111F1_015.ab1   400 
  554  C BE499309Ld04P026F08P026B111R1_015.ab1   109 
  566    BE499309Ld04P026F08P026B111F1_015.ab1   432 
  594  C BE499309Ld04P026F08P026B111R1_015.ab1    69 
  606    BE499309Ld04P026F08P026B111F1_015.ab1   472 
  610  C BE499309Ld04P026F08P026B111R1_015.ab1    53 
  622    BE499309Ld04P026F08P026B111F1_015.ab1   488 
  638  C BE499309Ld04P026F08P026B111R1_015.ab1    25 
  650    BE499309Ld04P026F08P026B111F1_015.ab1   516 
Contig length: old 795, new 795

Contig length: old 795, new 795
New start: 0