No. words: 1899; after pruning: 1860


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:1)  462  1.01 0.40 0.00  BE517709Sn28P067E04P101F071R1_022.ab1        4   499 (202)    BE517709Sn28P067E04P101F071R1_054.ab1        1   498 (0) *
Merge:(0)    3    0.0 9.6 (2,1:648)  603  0.62 0.62 0.00  BE517709Sn28P067E04P101F071R1_022.ab1        1   644 (57)  C BE517709Sn28P067E04P101F071F1_022.ab1   (49)   651     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  782 nodes

 363 str. conn. components

Path
    1  C BE517709Sn28P067E04P101F071F1_022.ab1   700 
  151    BE517709Sn28P067E04P101F071R1_054.ab1    99 
  154    BE517709Sn28P067E04P101F071R1_022.ab1   103 
  159  C BE517709Sn28P067E04P101F071F1_022.ab1   542 
  207    BE517709Sn28P067E04P101F071R1_022.ab1   156 
  216  C BE517709Sn28P067E04P101F071F1_022.ab1   484 
  280    BE517709Sn28P067E04P101F071R1_022.ab1   229 
  288  C BE517709Sn28P067E04P101F071F1_022.ab1   412 
  340    BE517709Sn28P067E04P101F071R1_022.ab1   289 
  364  C BE517709Sn28P067E04P101F071F1_022.ab1   336 
  404    BE517709Sn28P067E04P101F071R1_022.ab1   353 
  516  C BE517709Sn28P067E04P101F071F1_022.ab1   184 
  536    BE517709Sn28P067E04P101F071R1_022.ab1   485 
  620  C BE517709Sn28P067E04P101F071F1_022.ab1    80 
  624    BE517709Sn28P067E04P101F071R1_022.ab1   573 
Contig length: old 752, new 752

Contig length: old 752, new 752
New start: 0