No. words: 1285; after pruning: 1259


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.2 (1,1:637)  569  0.64 0.48 0.64  BE517914Ld02P067F04P067F101F1_058.ab1        5   628 (0)  C BE517914Ld02P067F04P067F101R1_058.ab1   (26)   631     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C BE517914Ld02P067F04P067F101R1_058.ab1   657 
   36    BE517914Ld02P067F04P067F101F1_058.ab1    15 
  178  C BE517914Ld02P067F04P067F101R1_058.ab1   482 
  182    BE517914Ld02P067F04P067F101F1_058.ab1   161 
  274  C BE517914Ld02P067F04P067F101R1_058.ab1   386 
  502    BE517914Ld02P067F04P067F101F1_058.ab1   481 
  510  C BE517914Ld02P067F04P067F101R1_058.ab1   150 
Contig length: old 657, new 659

Contig length: old 659, new 660
New start: 0 
I Change at: 34; seg lengths: entry 1, contig 0
S Change at: 51; seg lengths: entry 6, contig 6