No. words: 1237; after pruning: 1211


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.7 (1,1:569)  456  4.39 0.18 0.88  BE518003Ta21P067G04P101E081F2_027.ab1        1   569 (21)  C BE518003Ta21P067G04P101E081R2_027.ab1   (80)   567     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C BE518003Ta21P067G04P101E081R2_027.ab1   647 
   93    BE518003Ta21P067G04P101E081F2_027.ab1    13 
   97  C BE518003Ta21P067G04P101E081R2_027.ab1   551 
  125    BE518003Ta21P067G04P101E081F2_027.ab1    45 
  129  C BE518003Ta21P067G04P101E081R2_027.ab1   519 
  147    BE518003Ta21P067G04P101E081F2_027.ab1    70 
  163  C BE518003Ta21P067G04P101E081R2_027.ab1   485 
  206    BE518003Ta21P067G04P101E081F2_027.ab1   129 
  216  C BE518003Ta21P067G04P101E081R2_027.ab1   432 
  228    BE518003Ta21P067G04P101E081F2_027.ab1   151 
  240  C BE518003Ta21P067G04P101E081R2_027.ab1   408 
  244    BE518003Ta21P067G04P101E081F2_027.ab1   167 
  253  C BE518003Ta21P067G04P101E081R2_027.ab1   395 
  257    BE518003Ta21P067G04P101E081F2_027.ab1   180 
  265  C BE518003Ta21P067G04P101E081R2_027.ab1   383 
  273    BE518003Ta21P067G04P101E081F2_027.ab1   196 
  281  C BE518003Ta21P067G04P101E081R2_027.ab1   367 
  285    BE518003Ta21P067G04P101E081F2_027.ab1   208 
  289  C BE518003Ta21P067G04P101E081R2_027.ab1   359 
  326    BE518003Ta21P067G04P101E081F2_027.ab1   249 
  334  C BE518003Ta21P067G04P101E081R2_027.ab1   314 
  346    BE518003Ta21P067G04P101E081F2_027.ab1   269 
  350  C BE518003Ta21P067G04P101E081R2_027.ab1   298 
  386    BE518003Ta21P067G04P101E081F2_027.ab1   309 
  394  C BE518003Ta21P067G04P101E081R2_027.ab1   254 
  422    BE518003Ta21P067G04P101E081F2_027.ab1   345 
  426  C BE518003Ta21P067G04P101E081R2_027.ab1   222 
  434    BE518003Ta21P067G04P101E081F2_027.ab1   357 
  442  C BE518003Ta21P067G04P101E081R2_027.ab1   206 
  513    BE518003Ta21P067G04P101E081F2_027.ab1   435 
  526  C BE518003Ta21P067G04P101E081R2_027.ab1   122 
  640    BE518003Ta21P067G04P101E081F2_027.ab1   564 
Contig length: old 667, new 666

Contig length: old 666, new 666
New start: 0 
S Change at: 89; seg lengths: entry 1, contig 1
S Change at: 438; seg lengths: entry 1, contig 1
D Change at: 497; seg lengths: entry 0, contig 1
I Change at: 633; seg lengths: entry 1, contig 0