No. words: 1275; after pruning: 1249


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.9 -0.9 (1,1:584)  357 11.79 0.00 0.34  BE518003Td03P101C08P067G101F1_077.ab1        1   585 (5)  C BE518003Td03P101C08P067G101R1_077.ab1   (102)   583     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.9       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1  C BE518003Td03P101C08P067G101R1_077.ab1   685 
  112    BE518003Td03P101C08P067G101F1_077.ab1    10 
  123  C BE518003Td03P101C08P067G101R1_077.ab1   563 
  127    BE518003Td03P101C08P067G101F1_077.ab1    25 
  131  C BE518003Td03P101C08P067G101R1_077.ab1   555 
  194    BE518003Td03P101C08P067G101F1_077.ab1    93 
  198  C BE518003Td03P101C08P067G101R1_077.ab1   488 
  296    BE518003Td03P101C08P067G101F1_077.ab1   195 
  300  C BE518003Td03P101C08P067G101R1_077.ab1   386 
  340    BE518003Td03P101C08P067G101F1_077.ab1   239 
  344  C BE518003Td03P101C08P067G101R1_077.ab1   342 
  396    BE518003Td03P101C08P067G101F1_077.ab1   295 
  410  C BE518003Td03P101C08P067G101R1_077.ab1   276 
  487    BE518003Td03P101C08P067G101F1_077.ab1   387 
  503  C BE518003Td03P101C08P067G101R1_077.ab1   183 
  548    BE518003Td03P101C08P067G101F1_077.ab1   448 
  562  C BE518003Td03P101C08P067G101R1_077.ab1   124 
  615    BE518003Td03P101C08P067G101F1_077.ab1   515 
  619  C BE518003Td03P101C08P067G101R1_077.ab1    67 
  627    BE518003Td03P101C08P067G101F1_077.ab1   527 
  657  C BE518003Td03P101C08P067G101R1_077.ab1    29 
  669    BE518003Td03P101C08P067G101F1_077.ab1   569 
  673  C BE518003Td03P101C08P067G101R1_077.ab1    13 
  677    BE518003Td03P101C08P067G101F1_077.ab1   577 
Contig length: old 690, new 690

Contig length: old 690, new 692
New start: 0 
S Change at: 108; seg lengths: entry 1, contig 1
S Change at: 262; seg lengths: entry 5, contig 5
I Change at: 434; seg lengths: entry 1, contig 0
S Change at: 451; seg lengths: entry 1, contig 1
S Change at: 494; seg lengths: entry 3, contig 3
S Change at: 530; seg lengths: entry 3, contig 3
S Change at: 541; seg lengths: entry 1, contig 1
S Change at: 608; seg lengths: entry 1, contig 1
I Change at: 644; seg lengths: entry 1, contig 0
S Change at: 684; seg lengths: entry 1, contig 1