No. words: 2188; after pruning: 2136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   88    0.0 9.6 (1,1:-7)  417  0.00 0.23 0.00  BE586090Ld03P026D09P026H111R1_086.ab1        1   438 (88)    BE586090Ld03P026D09P026H111R1_019.ab1        7   445 (114)  
Merge:(0)   83    0.0 9.3 (1,1:0)  421  0.45 0.00 0.22  BE586090Ld03P026D09P026H111F1_086.ab1        1   447 (126)    BE586090Ld03P026D09P026H111F1_019.ab1        1   446 (84)  
Merge:(0)    0    0.0 8.0 (2,2:385)  369  0.00 0.25 0.25  BE586090Ld03P026D09P026H111F1_019.ab1        1   393 (137)  C BE586090Ld03P026D09P026H111R1_019.ab1   (166)   393     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       1        0
83       1        0
88       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1166 nodes

 237 str. conn. components

Path
    1  C BE586090Ld03P026D09P026H111R1_019.ab1   559 
  412    BE586090Ld03P026D09P026H111F1_086.ab1   246 
  492  C BE586090Ld03P026D09P026H111R1_086.ab1    61 
  493    BE586090Ld03P026D09P026H111F1_019.ab1   326 
  608    BE586090Ld03P026D09P026H111F1_086.ab1   442 
Contig length: old 739, new 739

Contig length: old 739, new 739
New start: 0