No. words: 1680; after pruning: 1640


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:1027)  638  0.31 0.00 0.00  BE591013As01P026F09P026B121F1_039.ab1      193   844 (0)  C BE591013As01P026F09P026B121R1_039.ab1   (0)   836   185 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1    BE591013As01P026F09P026B121F1_039.ab1     1 
  448  C BE591013As01P026F09P026B121R1_039.ab1   581 
  452    BE591013As01P026F09P026B121F1_039.ab1   452 
  492  C BE591013As01P026F09P026B121R1_039.ab1   537 
  500    BE591013As01P026F09P026B121F1_039.ab1   500 
  512  C BE591013As01P026F09P026B121R1_039.ab1   517 
  516    BE591013As01P026F09P026B121F1_039.ab1   516 
  544  C BE591013As01P026F09P026B121R1_039.ab1   485 
  548    BE591013As01P026F09P026B121F1_039.ab1   548 
  556  C BE591013As01P026F09P026B121R1_039.ab1   473 
  572    BE591013As01P026F09P026B121F1_039.ab1   572 
  576  C BE591013As01P026F09P026B121R1_039.ab1   453 
Contig length: old 1028, new 1028

Contig length: old 1028, new 1028
New start: 0