No. words: 1281; after pruning: 1255


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:481)  473  0.00 0.21 0.00  BE591099Ld05P103B06P103B121F1_030.ab1        1   482 (145)  C BE591099Ld05P103B06P103B121R1_030.ab1   (171)   483     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE591099Ld05P103B06P103B121R1_030.ab1   654 
  416    BE591099Ld05P103B06P103B121F1_030.ab1   244 
  472  C BE591099Ld05P103B06P103B121R1_030.ab1   183 
  484    BE591099Ld05P103B06P103B121F1_030.ab1   312 
Contig length: old 799, new 799

Contig length: old 799, new 799
New start: 0