No. words: 1022; after pruning: 996


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:346)  344  0.00 0.00 0.00  BE591181Ld02P026G09P026C121F1_033.ab1        1   347 (187)  C BE591181Ld02P026G09P026C121R1_033.ab1   (141)   347     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C BE591181Ld02P026G09P026C121R1_033.ab1   488 
  273    BE591181Ld02P026G09P026C121F1_033.ab1   132 
  337  C BE591181Ld02P026G09P026C121R1_033.ab1   152 
  377    BE591181Ld02P026G09P026C121F1_033.ab1   236 
  385  C BE591181Ld02P026G09P026C121R1_033.ab1   104 
  409    BE591181Ld02P026G09P026C121F1_033.ab1   268 
  413  C BE591181Ld02P026G09P026C121R1_033.ab1    76 
  441    BE591181Ld02P026G09P026C121F1_033.ab1   300 
  465  C BE591181Ld02P026G09P026C121R1_033.ab1    24 
  473    BE591181Ld02P026G09P026C121F1_033.ab1   332 
Contig length: old 675, new 675

Contig length: old 675, new 675
New start: 0